Basics of Philogenesis WB-BI-EOP-10cw
How to use GenBank databases and how search for sequences data in the programme Blast. GeneDoc - how edit sequences. Clustal X - sequence alignment. Methods for building phylogenetic trees . MEGA program -how to study the genetic mechanisms of evolutionary processes. Phylogenesis of apes based on the sequence of mitochondrial genes (cytB). Parsymony method in phylogenetics. Construction of phylogenetic tree based on the rRNA gene sequence of small ribosomal subunit (18SRNA). Assessment of the reliability of phylogenetic trees by self-sampling. Models of DNA and protein sequence evolution. Calculation of distances between sequences. Paup phylogenetic analysis program. Maximum likelihood method and choice of DNA sequence evolution model with PartitionFinder. MrBayes program and Bayesian approach to phylogenetic analysis. BEAST - dating of human phylogeny along with reconstruction of evolution of human and primate morphological features.
(in Polish) Dyscyplina naukowa, do której odnoszą się efekty uczenia się
(in Polish) E-Learning
Term 2021/22_L: (in Polish) E-Learning | Term 2022/23_L: (in Polish) E-Learning | Term 2020/21_L: (in Polish) E-Learning | Term 2019/20_L: (in Polish) E-Learning z podziałem na grupy |
(in Polish) Grupa przedmiotów ogólnouczenianych
Subject level
Learning outcome code/codes
Type of subject
Term 2021/22_L: optional with unlimited choices | Term 2022/23_L: optional with unlimited choices | Term 2020/21_L: optional with unlimited choices | Term 2019/20_L: obligatory |
Course coordinators
Learning outcomes
BI1_U01, BI1_U02, BI1_U09, BI1_K01, BI1_K03
Participation in exercises and passing the test is the basis for receiving ETCS points
Assessment criteria
Assessment credit - verification of learning outcomes through the worksheets checking acquired skills, part of the worksheets are open questions.
The final grade depends on the points from the worksheets; to get 3 (sufficient) - min. 60% is required, for 4 (good) - min. 75%, out of 5 (very good) - min. 90%.
Class attendance - two absences are admitted per semester, in special cases (hospital, special random accidents) three absences can be accepted. Three absences - lowering the grade by 0.5, more absences - incomplete, failed classes.
Activity and preparation for each class (possibility of raising the grade by 0.5).
Part of the learning is a remote form.
Bibliography
Barry G. Hall. Łatwe drzewa filogenetyczne
Notes
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Term 2021/22_L:
None |
Term 2022/23_L:
None |
Additional information
Additional information (registration calendar, class conductors, localization and schedules of classes), might be available in the USOSweb system: